Sources
Mondo uses the following ontologies as sources or for cross-references (xrefs)/alignments.
Source | ID Space/URI Prefix | Role | Website |
---|---|---|---|
OMIM Phenotypes | OMIM | Source | www.omim.org |
OMIM Phenotypic Series | OMIMPS | Source | www.omim.org |
Orphanet | Orpha | Source | https://www.orpha.net/consor/cgi-bin/index.php |
SNOMED (disorder subset) | SCTID | xref/Alignments | www.snomed.org |
National Cancer Institute Thesaurus (disease/disorder subset) | NCIT | Source | https://ncit.nci.nih.gov/ncitbrowser/ |
Genetic and Rare Diseases Information Center | GARD | Source | https://rarediseases.info.nih.gov/ |
Medical Subject Headings | MESH | xref/Alignments | https://id.nlm.nih.gov/mesh/ |
Unified Medical Language System | UMLS | xref/Alignments | https://www.nlm.nih.gov/research/umls/index.html |
ICD - ICD-9 - International Classification of Diseases | ICD9 | xref/Alignments | https://www.cdc.gov/nchs/icd/icd9.htm |
ICD - ICD-10 - International Classification of Diseases | ICD10 | xref/Alignments | https://www.cdc.gov/nchs/icd/icd10cm.htm |
ICD11 Foundation | icd11.foundation | xref/Alignments | https://icd.who.int/dev11/ |
Experimental Factor Ontology | EFO | xref/Alignments* | https://www.ebi.ac.uk/efo/ |
Disease Ontology | DO | Source | http://www.obofoundry.org/ontology/doid.html |
Mental Functioning Ontology | MF | Source | http://www.obofoundry.org/ontology/mf.html |
MedGen | MEDGEN | xref/Alignments | https://www.ncbi.nlm.nih.gov/medgen/ |
Ontology for General Medical Science | OGMS | xref/Alignments | https://github.com/OGMS/ogms |
Medical Dictionary for Regulatory Activities | MeDRA | xref/Alignments | https://www.meddra.org/ |
OncoTree | ONCOTREE | xref/Alignments | http://oncotree.mskcc.org/#/home |
*historic